USER = jtomczak HOMEDIR = /home/users/jtomczak JOB_ID = 483 JOB_NAME = FS-K-150-6 QUEUE = ibm NSLOTS = 32 NHOSTS = 3 SUB_HOST = rupc06 SUB_DIR = /mnt/wk07/jtomczak/DATA/MATERIALS/FeSi/DMFT/QMC/U5.0/FAST/beta150/nf6/NEW/GO/KERNEL EXE_HOST = n207 NFS_HOST = rupc-caip-04 EXE_DIR = /mnt/p06 OUT_DIR = /tmp TMP_DIR = /tmp/483.1.ibm INFO = Files larger than 100MB will be compressed to reduce the network load. INFO2 = Do NOT remove this file while job is running! PORT = 20483 rcp: /mnt/wk07/jtomczak/DATA/MATERIALS/FeSi/DMFT/QMC/U5.0/FAST/beta150/nf6/NEW/GO/KERNEL/0.005: not a plain file Failure to rcp files! Your job started at Tue May 10 11:42:29 EDT 2011 on host n207 in /mnt/p06/483jtomczak Submission directory is /mnt/wk07/jtomczak/DATA/MATERIALS/FeSi/DMFT/QMC/U5.0/FAST/beta150/nf6/NEW/GO/KERNEL on host rupc06 ----------------------------------------------------------------------------------------- + echo -catch_rsh /opt/sge6/spool/n207/active_jobs/483.1/pe_hostfile /opt/mpich2/gnu/ -catch_rsh /opt/sge6/spool/n207/active_jobs/483.1/pe_hostfile /opt/mpich2/gnu/ + SLEEPTIME=5 + RETRIES=10 + catch_rsh=0 + catch_hostname=0 + '[' 3 -gt 0 ']' + case "$1" in + catch_rsh=1 + shift + '[' 2 -gt 0 ']' + case "$1" in + break ++ basename /opt/sge6/mpich2_smpd/startmpich2.sh + me=startmpich2.sh + '[' 2 -lt 2 ']' + pe_hostfile=/opt/sge6/spool/n207/active_jobs/483.1/pe_hostfile + MPICH2_ROOT=/opt/mpich2/gnu/ + export MPICH2_ROOT + '[' '!' -x /opt/sge6/mpich2_smpd/bin/lx26-ppc64/start_mpich2 ']' + '[' '!' -x /opt/mpich2/gnu//bin/smpd ']' + '[' '!' -r /opt/sge6/spool/n207/active_jobs/483.1/pe_hostfile ']' + machines=/tmp/483.1.ibm/machines + PeHostfile2MachineFile /opt/sge6/spool/n207/active_jobs/483.1/pe_hostfile + cat /opt/sge6/spool/n207/active_jobs/483.1/pe_hostfile + read line ++ echo n207 12 ibm@n207 UNDEFINED ++ cut -f1 '-d ' ++ cut -f1 -d. + host=n207 ++ echo n207 12 ibm@n207 UNDEFINED ++ cut -f2 '-d ' + nslots=12 + i=1 + '[' 1 -le 12 ']' + echo n207 ++ expr 1 + 1 + i=2 + '[' 2 -le 12 ']' + echo n207 ++ expr 2 + 1 + i=3 + '[' 3 -le 12 ']' + echo n207 ++ expr 3 + 1 + i=4 + '[' 4 -le 12 ']' + echo n207 ++ expr 4 + 1 + i=5 + '[' 5 -le 12 ']' + echo n207 ++ expr 5 + 1 + i=6 + '[' 6 -le 12 ']' + echo n207 ++ expr 6 + 1 + i=7 + '[' 7 -le 12 ']' + echo n207 ++ expr 7 + 1 + i=8 + '[' 8 -le 12 ']' + echo n207 ++ expr 8 + 1 + i=9 + '[' 9 -le 12 ']' + echo n207 ++ expr 9 + 1 + i=10 + '[' 10 -le 12 ']' + echo n207 ++ expr 10 + 1 + i=11 + '[' 11 -le 12 ']' + echo n207 ++ expr 11 + 1 + i=12 + '[' 12 -le 12 ']' + echo n207 ++ expr 12 + 1 + i=13 + '[' 13 -le 12 ']' + read line ++ echo n203 16 ibm@n203 UNDEFINED ++ cut -f1 '-d ' ++ cut -f1 -d. + host=n203 ++ echo n203 16 ibm@n203 UNDEFINED ++ cut -f2 '-d ' + nslots=16 + i=1 + '[' 1 -le 16 ']' + echo n203 ++ expr 1 + 1 + i=2 + '[' 2 -le 16 ']' + echo n203 ++ expr 2 + 1 + i=3 + '[' 3 -le 16 ']' + echo n203 ++ expr 3 + 1 + i=4 + '[' 4 -le 16 ']' + echo n203 ++ expr 4 + 1 + i=5 + '[' 5 -le 16 ']' + echo n203 ++ expr 5 + 1 + i=6 + '[' 6 -le 16 ']' + echo n203 ++ expr 6 + 1 + i=7 + '[' 7 -le 16 ']' + echo n203 ++ expr 7 + 1 + i=8 + '[' 8 -le 16 ']' + echo n203 ++ expr 8 + 1 + i=9 + '[' 9 -le 16 ']' + echo n203 ++ expr 9 + 1 + i=10 + '[' 10 -le 16 ']' + echo n203 ++ expr 10 + 1 + i=11 + '[' 11 -le 16 ']' + echo n203 ++ expr 11 + 1 + i=12 + '[' 12 -le 16 ']' + echo n203 ++ expr 12 + 1 + i=13 + '[' 13 -le 16 ']' + echo n203 ++ expr 13 + 1 + i=14 + '[' 14 -le 16 ']' + echo n203 ++ expr 14 + 1 + i=15 + '[' 15 -le 16 ']' + echo n203 ++ expr 15 + 1 + i=16 + '[' 16 -le 16 ']' + echo n203 ++ expr 16 + 1 + i=17 + '[' 17 -le 16 ']' + read line ++ echo n204 4 ibm@n204 UNDEFINED ++ cut -f1 '-d ' ++ cut -f1 -d. + host=n204 ++ echo n204 4 ibm@n204 UNDEFINED ++ cut -f2 '-d ' + nslots=4 + i=1 + '[' 1 -le 4 ']' + echo n204 ++ expr 1 + 1 + i=2 + '[' 2 -le 4 ']' + echo n204 ++ expr 2 + 1 + i=3 + '[' 3 -le 4 ']' + echo n204 ++ expr 3 + 1 + i=4 + '[' 4 -le 4 ']' + echo n204 ++ expr 4 + 1 + i=5 + '[' 5 -le 4 ']' + read line + cat /tmp/483.1.ibm/machines n207 n207 n207 n207 n207 n207 n207 n207 n207 n207 n207 n207 n203 n203 n203 n203 n203 n203 n203 n203 n203 n203 n203 n203 n203 n203 n203 n203 n204 n204 n204 n204 + '[' 1 = 1 ']' + rsh_wrapper=/opt/sge6/mpich2_smpd/rsh + '[' '!' -x /opt/sge6/mpich2_smpd/rsh ']' + rshcmd=rsh + case "$ARC" in + ln -s /opt/sge6/mpich2_smpd/rsh /tmp/483.1.ibm/rsh + hash -r + '[' 0 = 1 ']' + port=20483 ++ cat /tmp/483.1.ibm/machines ++ uniq + for host in '`cat $machines | uniq`' + /opt/sge6/mpich2_smpd/bin/lx26-ppc64/start_mpich2 -n n207 /opt/mpich2/gnu//bin/smpd 20483 + for host in '`cat $machines | uniq`' + /opt/sge6/mpich2_smpd/bin/lx26-ppc64/start_mpich2 -n n203 /opt/mpich2/gnu//bin/smpd 20483 + for host in '`cat $machines | uniq`' + /opt/sge6/mpich2_smpd/bin/lx26-ppc64/start_mpich2 -n n204 /opt/mpich2/gnu//bin/smpd 20483 + actual_retry=1 + '[' 1 -le 10 ']' + echo 'startmpich2.sh: check for smpd daemons (1 of 10)' startmpich2.sh: check for smpd daemons (1 of 10) + numhosts=0 ++ cat /tmp/483.1.ibm/machines ++ uniq + for host in '`cat $machines | uniq`' ++ /opt/mpich2/gnu//bin/smpd -port 20483 -status n207 ++ head -n 1 ++ cut -f 1 -d ' ' rsh n207 /opt/mpich2/gnu//bin/smpd -port 20483 -d 0 rsh n203 /opt/mpich2/gnu//bin/smpd -port 20483 -d 0 Assertion failed in file smpd_sock_wait.i at line 337: pollinfo->state == SMPDU_SOCKI_STATE_DISCONNECTED && pollfd->fd == -1 internal ABORT - process 0 + '[' '' == smpd ']' + echo 'startmpich2.sh: missing smpd on n207' startmpich2.sh: missing smpd on n207 + for host in '`cat $machines | uniq`' rsh n204 /opt/mpich2/gnu//bin/smpd -port 20483 -d 0 ++ /opt/mpich2/gnu//bin/smpd -port 20483 -status n203 ++ head -n 1 ++ cut -f 1 -d ' ' Assertion failed in file smpd_sock_wait.i at line 337: pollinfo->state == SMPDU_SOCKI_STATE_DISCONNECTED && pollfd->fd == -1 internal ABORT - process 0 + '[' '' == smpd ']' + echo 'startmpich2.sh: missing smpd on n203' startmpich2.sh: missing smpd on n203 + for host in '`cat $machines | uniq`' ++ /opt/mpich2/gnu//bin/smpd -port 20483 -status n204 ++ head -n 1 ++ cut -f 1 -d ' ' Assertion failed in file smpd_sock_wait.i at line 337: pollinfo->state == SMPDU_SOCKI_STATE_DISCONNECTED && pollfd->fd == -1 internal ABORT - process 0 + '[' '' == smpd ']' + echo 'startmpich2.sh: missing smpd on n204' startmpich2.sh: missing smpd on n204 + '[' 3 -eq 0 ']' + sleep 5 + (( actual_retry += 1 )) + '[' 2 -le 10 ']' + echo 'startmpich2.sh: check for smpd daemons (2 of 10)' startmpich2.sh: check for smpd daemons (2 of 10) + numhosts=0 ++ cat /tmp/483.1.ibm/machines ++ uniq + for host in '`cat $machines | uniq`' ++ /opt/mpich2/gnu//bin/smpd -port 20483 -status n207 ++ head -n 1 ++ cut -f 1 -d ' ' + '[' smpd == smpd ']' + (( numhosts += 1 )) + echo 'startmpich2.sh: found running smpd on n207' startmpich2.sh: found running smpd on n207 + for host in '`cat $machines | uniq`' ++ /opt/mpich2/gnu//bin/smpd -port 20483 -status n203 ++ head -n 1 ++ cut -f 1 -d ' ' + '[' smpd == smpd ']' + (( numhosts += 1 )) + echo 'startmpich2.sh: found running smpd on n203' startmpich2.sh: found running smpd on n203 + for host in '`cat $machines | uniq`' ++ /opt/mpich2/gnu//bin/smpd -port 20483 -status n204 ++ head -n 1 ++ cut -f 1 -d ' ' + '[' smpd == smpd ']' + (( numhosts += 1 )) + echo 'startmpich2.sh: found running smpd on n204' startmpich2.sh: found running smpd on n204 + '[' 3 -eq 3 ']' + echo 'startmpich2.sh: got all 3 of 3 nodes' startmpich2.sh: got all 3 of 3 nodes + exit 0 /tmp/483.1.ibm:/usr/local/bin:/bin:/usr/bin rm: cannot remove `*.phi': No such file or directory rm: cannot remove `*outputkernel*': No such file or directory rm: cannot remove `wnohu*': No such file or directory START END rm: cannot remove `*vector*': No such file or directory -catch_rsh /opt/mpich2/gnu/ Your job finished at Tue May 10 17:02:13 EDT 2011