USER = jtomczak HOMEDIR = /home/users/jtomczak JOB_ID = 17721 JOB_NAME = FS-b150-6 QUEUE = wp10 NSLOTS = 20 NHOSTS = 2 SUB_HOST = rupc04 SUB_DIR = /mnt/wk07/jtomczak/DATA/MATERIALS/FeSi/DMFT/QMC/U5.0/FAST/beta150/nf6/NEW EXE_HOST = n155 NFS_HOST = caip02s EXE_DIR = /mnt/p06 OUT_DIR = /tmp TMP_DIR = /tmp/17721.1.wp10 INFO = Files larger than 100MB will be compressed to reduce the network load. INFO2 = Do NOT remove this file while job is running! PORT = 22721 rcp: /mnt/wk07/jtomczak/DATA/MATERIALS/FeSi/DMFT/QMC/U5.0/FAST/beta150/nf6/NEW/17561jtomczak: not a plain file rcp: /mnt/wk07/jtomczak/DATA/MATERIALS/FeSi/DMFT/QMC/U5.0/FAST/beta150/nf6/NEW/FIX_mu: not a plain file rcp: /mnt/wk07/jtomczak/DATA/MATERIALS/FeSi/DMFT/QMC/U5.0/FAST/beta150/nf6/NEW/FIX_mu_2: not a plain file rcp: /mnt/wk07/jtomczak/DATA/MATERIALS/FeSi/DMFT/QMC/U5.0/FAST/beta150/nf6/NEW/FIX_mu_3: not a plain file rcp: /mnt/wk07/jtomczak/DATA/MATERIALS/FeSi/DMFT/QMC/U5.0/FAST/beta150/nf6/NEW/GO: not a plain file rcp: /mnt/wk07/jtomczak/DATA/MATERIALS/FeSi/DMFT/QMC/U5.0/FAST/beta150/nf6/NEW/GO-small: not a plain file rcp: /mnt/wk07/jtomczak/DATA/MATERIALS/FeSi/DMFT/QMC/U5.0/FAST/beta150/nf6/NEW/ancont: not a plain file rcp: /mnt/wk07/jtomczak/DATA/MATERIALS/FeSi/DMFT/QMC/U5.0/FAST/beta150/nf6/NEW/cdos: not a plain file rcp: /mnt/wk07/jtomczak/DATA/MATERIALS/FeSi/DMFT/QMC/U5.0/FAST/beta150/nf6/NEW/imp.0: not a plain file Failure to rcp files! Your job started at Sat Nov 5 14:31:48 EDT 2011 on host n155 in /mnt/p06/17721jtomczak Submission directory is /mnt/wk07/jtomczak/DATA/MATERIALS/FeSi/DMFT/QMC/U5.0/FAST/beta150/nf6/NEW on host rupc04 ----------------------------------------------------------------------------------------- + echo -catch_rsh /opt/sge6/spool/n155/active_jobs/17721.1/pe_hostfile /opt/mpich2/intel/11.1/ -catch_rsh /opt/sge6/spool/n155/active_jobs/17721.1/pe_hostfile /opt/mpich2/intel/11.1/ + SLEEPTIME=5 + RETRIES=10 + catch_rsh=0 + catch_hostname=0 + '[' 3 -gt 0 ']' + case "$1" in + catch_rsh=1 + shift + '[' 2 -gt 0 ']' + case "$1" in + break ++ basename /opt/sge6/mpich2_smpd/startmpich2.sh + me=startmpich2.sh + '[' 2 -lt 2 ']' + pe_hostfile=/opt/sge6/spool/n155/active_jobs/17721.1/pe_hostfile + MPICH2_ROOT=/opt/mpich2/intel/11.1/ + export MPICH2_ROOT + '[' '!' -x /opt/sge6/mpich2_smpd/bin/lx26-amd64/start_mpich2 ']' + '[' '!' -x /opt/mpich2/intel/11.1//bin/smpd ']' + '[' '!' -r /opt/sge6/spool/n155/active_jobs/17721.1/pe_hostfile ']' + machines=/tmp/17721.1.wp10/machines + PeHostfile2MachineFile /opt/sge6/spool/n155/active_jobs/17721.1/pe_hostfile + cat /opt/sge6/spool/n155/active_jobs/17721.1/pe_hostfile + read line ++ echo n155 12 wp10@n155 UNDEFINED ++ cut -f1 '-d ' ++ cut -f1 -d. + host=n155 ++ echo n155 12 wp10@n155 UNDEFINED ++ cut -f2 '-d ' + nslots=12 + i=1 + '[' 1 -le 12 ']' + echo n155 ++ expr 1 + 1 + i=2 + '[' 2 -le 12 ']' + echo n155 ++ expr 2 + 1 + i=3 + '[' 3 -le 12 ']' + echo n155 ++ expr 3 + 1 + i=4 + '[' 4 -le 12 ']' + echo n155 ++ expr 4 + 1 + i=5 + '[' 5 -le 12 ']' + echo n155 ++ expr 5 + 1 + i=6 + '[' 6 -le 12 ']' + echo n155 ++ expr 6 + 1 + i=7 + '[' 7 -le 12 ']' + echo n155 ++ expr 7 + 1 + i=8 + '[' 8 -le 12 ']' + echo n155 ++ expr 8 + 1 + i=9 + '[' 9 -le 12 ']' + echo n155 ++ expr 9 + 1 + i=10 + '[' 10 -le 12 ']' + echo n155 ++ expr 10 + 1 + i=11 + '[' 11 -le 12 ']' + echo n155 ++ expr 11 + 1 + i=12 + '[' 12 -le 12 ']' + echo n155 ++ expr 12 + 1 + i=13 + '[' 13 -le 12 ']' + read line ++ echo n157 8 wp10@n157 UNDEFINED ++ cut -f1 '-d ' ++ cut -f1 -d. + host=n157 ++ echo n157 8 wp10@n157 UNDEFINED ++ cut -f2 '-d ' + nslots=8 + i=1 + '[' 1 -le 8 ']' + echo n157 ++ expr 1 + 1 + i=2 + '[' 2 -le 8 ']' + echo n157 ++ expr 2 + 1 + i=3 + '[' 3 -le 8 ']' + echo n157 ++ expr 3 + 1 + i=4 + '[' 4 -le 8 ']' + echo n157 ++ expr 4 + 1 + i=5 + '[' 5 -le 8 ']' + echo n157 ++ expr 5 + 1 + i=6 + '[' 6 -le 8 ']' + echo n157 ++ expr 6 + 1 + i=7 + '[' 7 -le 8 ']' + echo n157 ++ expr 7 + 1 + i=8 + '[' 8 -le 8 ']' + echo n157 ++ expr 8 + 1 + i=9 + '[' 9 -le 8 ']' + read line + cat /tmp/17721.1.wp10/machines n155 n155 n155 n155 n155 n155 n155 n155 n155 n155 n155 n155 n157 n157 n157 n157 n157 n157 n157 n157 + '[' 1 = 1 ']' + rsh_wrapper=/opt/sge6/mpich2_smpd/rsh + '[' '!' -x /opt/sge6/mpich2_smpd/rsh ']' + rshcmd=rsh + case "$ARC" in + ln -s /opt/sge6/mpich2_smpd/rsh /tmp/17721.1.wp10/rsh + hash -r + '[' 0 = 1 ']' + port=22721 ++ cat /tmp/17721.1.wp10/machines ++ uniq + for host in '`cat $machines | uniq`' + /opt/sge6/mpich2_smpd/bin/lx26-amd64/start_mpich2 -n n155 /opt/mpich2/intel/11.1//bin/smpd 22721 + for host in '`cat $machines | uniq`' + /opt/sge6/mpich2_smpd/bin/lx26-amd64/start_mpich2 -n n157 /opt/mpich2/intel/11.1//bin/smpd 22721 + actual_retry=1 + '[' 1 -le 10 ']' + echo 'startmpich2.sh: check for smpd daemons (1 of 10)' startmpich2.sh: check for smpd daemons (1 of 10) + numhosts=0 ++ cat /tmp/17721.1.wp10/machines ++ uniq + for host in '`cat $machines | uniq`' ++ /opt/mpich2/intel/11.1//bin/smpd -port 22721 -status n155 ++ head -n 1 ++ cut -f 1 -d ' ' rsh n155 /opt/mpich2/intel/11.1//bin/smpd -port 22721 -d 0 rsh n157 /opt/mpich2/intel/11.1//bin/smpd -port 22721 -d 0 Assertion failed in file smpd_sock_wait.i at line 337: pollinfo->state == SMPDU_SOCKI_STATE_DISCONNECTED && pollfd->fd == -1 internal ABORT - process 0 + '[' '' == smpd ']' + echo 'startmpich2.sh: missing smpd on n155' startmpich2.sh: missing smpd on n155 + for host in '`cat $machines | uniq`' ++ /opt/mpich2/intel/11.1//bin/smpd -port 22721 -status n157 ++ head -n 1 ++ cut -f 1 -d ' ' Assertion failed in file smpd_sock_wait.i at line 337: pollinfo->state == SMPDU_SOCKI_STATE_DISCONNECTED && pollfd->fd == -1 internal ABORT - process 0 + '[' '' == smpd ']' + echo 'startmpich2.sh: missing smpd on n157' startmpich2.sh: missing smpd on n157 + '[' 2 -eq 0 ']' + sleep 5 + (( actual_retry += 1 )) + '[' 2 -le 10 ']' + echo 'startmpich2.sh: check for smpd daemons (2 of 10)' startmpich2.sh: check for smpd daemons (2 of 10) + numhosts=0 ++ cat /tmp/17721.1.wp10/machines ++ uniq + for host in '`cat $machines | uniq`' ++ /opt/mpich2/intel/11.1//bin/smpd -port 22721 -status n155 ++ head -n 1 ++ cut -f 1 -d ' ' + '[' smpd == smpd ']' + (( numhosts += 1 )) + echo 'startmpich2.sh: found running smpd on n155' startmpich2.sh: found running smpd on n155 + for host in '`cat $machines | uniq`' ++ /opt/mpich2/intel/11.1//bin/smpd -port 22721 -status n157 ++ head -n 1 ++ cut -f 1 -d ' ' + '[' smpd == smpd ']' + (( numhosts += 1 )) + echo 'startmpich2.sh: found running smpd on n157' startmpich2.sh: found running smpd on n157 + '[' 2 -eq 2 ']' + echo 'startmpich2.sh: got all 2 of 2 nodes' startmpich2.sh: got all 2 of 2 nodes + exit 0 rm: cannot remove `mpi_prefix.dat': No such file or directory START -catch_rsh /opt/mpich2/intel/11.1/ Your job finished at Sun Nov 6 16:11:20 EST 2011