USER = jtomczak HOMEDIR = /home/users/jtomczak JOB_ID = 4667 JOB_NAME = FS-b150-6 QUEUE = wp10 NSLOTS = 25 NHOSTS = 7 SUB_HOST = rupc06 SUB_DIR = /mnt/wk07/jtomczak/DATA/MATERIALS/FeSi/DMFT/QMC/U5.0/FAST/beta150/nf6 EXE_HOST = n162 NFS_HOST = caip02s EXE_DIR = /mnt/p06 OUT_DIR = /tmp TMP_DIR = /tmp/4667.1.wp10 INFO = Files larger than 100MB will be compressed to reduce the network load. INFO2 = Do NOT remove this file while job is running! PORT = 24667 rcp: /mnt/wk07/jtomczak/DATA/MATERIALS/FeSi/DMFT/QMC/U5.0/FAST/beta150/nf6/imp.0: not a plain file Failure to rcp files! Your job started at Wed Apr 6 08:41:38 EDT 2011 on host n162 in /mnt/p06/4667jtomczak Submission directory is /mnt/wk07/jtomczak/DATA/MATERIALS/FeSi/DMFT/QMC/U5.0/FAST/beta150/nf6 on host rupc06 ----------------------------------------------------------------------------------------- + echo -catch_rsh /opt/sge6/spool/n162/active_jobs/4667.1/pe_hostfile /opt/mpich2/intel/11.1/ -catch_rsh /opt/sge6/spool/n162/active_jobs/4667.1/pe_hostfile /opt/mpich2/intel/11.1/ + SLEEPTIME=5 + RETRIES=10 + catch_rsh=0 + catch_hostname=0 + '[' 3 -gt 0 ']' + case "$1" in + catch_rsh=1 + shift + '[' 2 -gt 0 ']' + case "$1" in + break ++ basename /opt/sge6/mpich2_smpd/startmpich2.sh + me=startmpich2.sh + '[' 2 -lt 2 ']' + pe_hostfile=/opt/sge6/spool/n162/active_jobs/4667.1/pe_hostfile + MPICH2_ROOT=/opt/mpich2/intel/11.1/ + export MPICH2_ROOT + '[' '!' -x /opt/sge6/mpich2_smpd/bin/lx26-amd64/start_mpich2 ']' + '[' '!' -x /opt/mpich2/intel/11.1//bin/smpd ']' + '[' '!' -r /opt/sge6/spool/n162/active_jobs/4667.1/pe_hostfile ']' + machines=/tmp/4667.1.wp10/machines + PeHostfile2MachineFile /opt/sge6/spool/n162/active_jobs/4667.1/pe_hostfile + cat /opt/sge6/spool/n162/active_jobs/4667.1/pe_hostfile + read line ++ echo n162 3 wp10@n162 UNDEFINED ++ cut -f1 '-d ' ++ cut -f1 -d. + host=n162 ++ echo n162 3 wp10@n162 UNDEFINED ++ cut -f2 '-d ' + nslots=3 + i=1 + '[' 1 -le 3 ']' + echo n162 ++ expr 1 + 1 + i=2 + '[' 2 -le 3 ']' + echo n162 ++ expr 2 + 1 + i=3 + '[' 3 -le 3 ']' + echo n162 ++ expr 3 + 1 + i=4 + '[' 4 -le 3 ']' + read line ++ echo n165 2 wp10@n165 UNDEFINED ++ cut -f1 '-d ' ++ cut -f1 -d. + host=n165 ++ echo n165 2 wp10@n165 UNDEFINED ++ cut -f2 '-d ' + nslots=2 + i=1 + '[' 1 -le 2 ']' + echo n165 ++ expr 1 + 1 + i=2 + '[' 2 -le 2 ']' + echo n165 ++ expr 2 + 1 + i=3 + '[' 3 -le 2 ']' + read line ++ echo n161 1 wp10@n161 UNDEFINED ++ cut -f1 '-d ' ++ cut -f1 -d. + host=n161 ++ echo n161 1 wp10@n161 UNDEFINED ++ cut -f2 '-d ' + nslots=1 + i=1 + '[' 1 -le 1 ']' + echo n161 ++ expr 1 + 1 + i=2 + '[' 2 -le 1 ']' + read line ++ echo n155 4 wp10@n155 UNDEFINED ++ cut -f1 '-d ' ++ cut -f1 -d. + host=n155 ++ echo n155 4 wp10@n155 UNDEFINED ++ cut -f2 '-d ' + nslots=4 + i=1 + '[' 1 -le 4 ']' + echo n155 ++ expr 1 + 1 + i=2 + '[' 2 -le 4 ']' + echo n155 ++ expr 2 + 1 + i=3 + '[' 3 -le 4 ']' + echo n155 ++ expr 3 + 1 + i=4 + '[' 4 -le 4 ']' + echo n155 ++ expr 4 + 1 + i=5 + '[' 5 -le 4 ']' + read line ++ echo n146 1 wp10@n146 UNDEFINED ++ cut -f1 '-d ' ++ cut -f1 -d. + host=n146 ++ echo n146 1 wp10@n146 UNDEFINED ++ cut -f2 '-d ' + nslots=1 + i=1 + '[' 1 -le 1 ']' + echo n146 ++ expr 1 + 1 + i=2 + '[' 2 -le 1 ']' + read line ++ echo n149 4 wp10@n149 UNDEFINED ++ cut -f1 '-d ' ++ cut -f1 -d. + host=n149 ++ echo n149 4 wp10@n149 UNDEFINED ++ cut -f2 '-d ' + nslots=4 + i=1 + '[' 1 -le 4 ']' + echo n149 ++ expr 1 + 1 + i=2 + '[' 2 -le 4 ']' + echo n149 ++ expr 2 + 1 + i=3 + '[' 3 -le 4 ']' + echo n149 ++ expr 3 + 1 + i=4 + '[' 4 -le 4 ']' + echo n149 ++ expr 4 + 1 + i=5 + '[' 5 -le 4 ']' + read line ++ echo n143 10 wp10@n143 UNDEFINED ++ cut -f1 '-d ' ++ cut -f1 -d. + host=n143 ++ echo n143 10 wp10@n143 UNDEFINED ++ cut -f2 '-d ' + nslots=10 + i=1 + '[' 1 -le 10 ']' + echo n143 ++ expr 1 + 1 + i=2 + '[' 2 -le 10 ']' + echo n143 ++ expr 2 + 1 + i=3 + '[' 3 -le 10 ']' + echo n143 ++ expr 3 + 1 + i=4 + '[' 4 -le 10 ']' + echo n143 ++ expr 4 + 1 + i=5 + '[' 5 -le 10 ']' + echo n143 ++ expr 5 + 1 + i=6 + '[' 6 -le 10 ']' + echo n143 ++ expr 6 + 1 + i=7 + '[' 7 -le 10 ']' + echo n143 ++ expr 7 + 1 + i=8 + '[' 8 -le 10 ']' + echo n143 ++ expr 8 + 1 + i=9 + '[' 9 -le 10 ']' + echo n143 ++ expr 9 + 1 + i=10 + '[' 10 -le 10 ']' + echo n143 ++ expr 10 + 1 + i=11 + '[' 11 -le 10 ']' + read line + cat /tmp/4667.1.wp10/machines n162 n162 n162 n165 n165 n161 n155 n155 n155 n155 n146 n149 n149 n149 n149 n143 n143 n143 n143 n143 n143 n143 n143 n143 n143 + '[' 1 = 1 ']' + rsh_wrapper=/opt/sge6/mpich2_smpd/rsh + '[' '!' -x /opt/sge6/mpich2_smpd/rsh ']' + rshcmd=rsh + case "$ARC" in + ln -s /opt/sge6/mpich2_smpd/rsh /tmp/4667.1.wp10/rsh + hash -r + '[' 0 = 1 ']' + port=24667 ++ cat /tmp/4667.1.wp10/machines ++ uniq + for host in '`cat $machines | uniq`' + /opt/sge6/mpich2_smpd/bin/lx26-amd64/start_mpich2 -n n162 /opt/mpich2/intel/11.1//bin/smpd 24667 + for host in '`cat $machines | uniq`' + /opt/sge6/mpich2_smpd/bin/lx26-amd64/start_mpich2 -n n165 /opt/mpich2/intel/11.1//bin/smpd 24667 + for host in '`cat $machines | uniq`' + /opt/sge6/mpich2_smpd/bin/lx26-amd64/start_mpich2 -n n161 /opt/mpich2/intel/11.1//bin/smpd 24667 + for host in '`cat $machines | uniq`' + /opt/sge6/mpich2_smpd/bin/lx26-amd64/start_mpich2 -n n155 /opt/mpich2/intel/11.1//bin/smpd 24667 + for host in '`cat $machines | uniq`' + /opt/sge6/mpich2_smpd/bin/lx26-amd64/start_mpich2 -n n146 /opt/mpich2/intel/11.1//bin/smpd 24667 + for host in '`cat $machines | uniq`' + /opt/sge6/mpich2_smpd/bin/lx26-amd64/start_mpich2 -n n149 /opt/mpich2/intel/11.1//bin/smpd 24667 rsh n162 /opt/mpich2/intel/11.1//bin/smpd -port 24667 -d 0 rsh n161 /opt/mpich2/intel/11.1//bin/smpd -port 24667 -d 0 rsh n165 /opt/mpich2/intel/11.1//bin/smpd -port 24667 -d 0 + for host in '`cat $machines | uniq`' + /opt/sge6/mpich2_smpd/bin/lx26-amd64/start_mpich2 -n n143 /opt/mpich2/intel/11.1//bin/smpd 24667 rsh n146 /opt/mpich2/intel/11.1//bin/smpd -port 24667 -d 0 + actual_retry=1 + '[' 1 -le 10 ']' + echo 'startmpich2.sh: check for smpd daemons (1 of 10)' startmpich2.sh: check for smpd daemons (1 of 10) + numhosts=0 rsh n149 /opt/mpich2/intel/11.1//bin/smpd -port 24667 -d 0 ++ cat /tmp/4667.1.wp10/machines ++ uniq rsh n155 /opt/mpich2/intel/11.1//bin/smpd -port 24667 -d 0 + for host in '`cat $machines | uniq`' ++ /opt/mpich2/intel/11.1//bin/smpd -port 24667 -status n162 ++ head -n 1 ++ cut -f 1 -d ' ' rsh n143 /opt/mpich2/intel/11.1//bin/smpd -port 24667 -d 0 Assertion failed in file smpd_sock_wait.i at line 337: pollinfo->state == SMPDU_SOCKI_STATE_DISCONNECTED && pollfd->fd == -1 internal ABORT - process 0 + '[' '' == smpd ']' + echo 'startmpich2.sh: missing smpd on n162' startmpich2.sh: missing smpd on n162 + for host in '`cat $machines | uniq`' ++ /opt/mpich2/intel/11.1//bin/smpd -port 24667 -status n165 ++ head -n 1 ++ cut -f 1 -d ' ' Assertion failed in file smpd_sock_wait.i at line 337: pollinfo->state == SMPDU_SOCKI_STATE_DISCONNECTED && pollfd->fd == -1 internal ABORT - process 0 + '[' '' == smpd ']' + echo 'startmpich2.sh: missing smpd on n165' startmpich2.sh: missing smpd on n165 + for host in '`cat $machines | uniq`' ++ /opt/mpich2/intel/11.1//bin/smpd -port 24667 -status n161 ++ head -n 1 ++ cut -f 1 -d ' ' Assertion failed in file smpd_sock_wait.i at line 337: pollinfo->state == SMPDU_SOCKI_STATE_DISCONNECTED && pollfd->fd == -1 internal ABORT - process 0 + '[' '' == smpd ']' + echo 'startmpich2.sh: missing smpd on n161' startmpich2.sh: missing smpd on n161 + for host in '`cat $machines | uniq`' ++ /opt/mpich2/intel/11.1//bin/smpd -port 24667 -status n155 ++ head -n 1 ++ cut -f 1 -d ' ' Assertion failed in file smpd_sock_wait.i at line 337: pollinfo->state == SMPDU_SOCKI_STATE_DISCONNECTED && pollfd->fd == -1 internal ABORT - process 0 + '[' '' == smpd ']' + echo 'startmpich2.sh: missing smpd on n155' startmpich2.sh: missing smpd on n155 + for host in '`cat $machines | uniq`' ++ /opt/mpich2/intel/11.1//bin/smpd -port 24667 -status n146 ++ head -n 1 ++ cut -f 1 -d ' ' Assertion failed in file smpd_sock_wait.i at line 337: pollinfo->state == SMPDU_SOCKI_STATE_DISCONNECTED && pollfd->fd == -1 internal ABORT - process 0 + '[' '' == smpd ']' + echo 'startmpich2.sh: missing smpd on n146' startmpich2.sh: missing smpd on n146 + for host in '`cat $machines | uniq`' ++ /opt/mpich2/intel/11.1//bin/smpd -port 24667 -status n149 ++ head -n 1 ++ cut -f 1 -d ' ' Assertion failed in file smpd_sock_wait.i at line 337: pollinfo->state == SMPDU_SOCKI_STATE_DISCONNECTED && pollfd->fd == -1 internal ABORT - process 0 + '[' '' == smpd ']' + echo 'startmpich2.sh: missing smpd on n149' startmpich2.sh: missing smpd on n149 + for host in '`cat $machines | uniq`' ++ /opt/mpich2/intel/11.1//bin/smpd -port 24667 -status n143 ++ head -n 1 ++ cut -f 1 -d ' ' Assertion failed in file smpd_sock_wait.i at line 337: pollinfo->state == SMPDU_SOCKI_STATE_DISCONNECTED && pollfd->fd == -1 internal ABORT - process 0 + '[' '' == smpd ']' + echo 'startmpich2.sh: missing smpd on n143' startmpich2.sh: missing smpd on n143 + '[' 7 -eq 0 ']' + sleep 5 + (( actual_retry += 1 )) + '[' 2 -le 10 ']' + echo 'startmpich2.sh: check for smpd daemons (2 of 10)' startmpich2.sh: check for smpd daemons (2 of 10) + numhosts=0 ++ cat /tmp/4667.1.wp10/machines ++ uniq + for host in '`cat $machines | uniq`' ++ /opt/mpich2/intel/11.1//bin/smpd -port 24667 -status n162 ++ head -n 1 ++ cut -f 1 -d ' ' + '[' smpd == smpd ']' + (( numhosts += 1 )) + echo 'startmpich2.sh: found running smpd on n162' startmpich2.sh: found running smpd on n162 + for host in '`cat $machines | uniq`' ++ /opt/mpich2/intel/11.1//bin/smpd -port 24667 -status n165 ++ head -n 1 ++ cut -f 1 -d ' ' + '[' smpd == smpd ']' + (( numhosts += 1 )) + echo 'startmpich2.sh: found running smpd on n165' startmpich2.sh: found running smpd on n165 + for host in '`cat $machines | uniq`' ++ /opt/mpich2/intel/11.1//bin/smpd -port 24667 -status n161 ++ head -n 1 ++ cut -f 1 -d ' ' + '[' smpd == smpd ']' + (( numhosts += 1 )) + echo 'startmpich2.sh: found running smpd on n161' startmpich2.sh: found running smpd on n161 + for host in '`cat $machines | uniq`' ++ /opt/mpich2/intel/11.1//bin/smpd -port 24667 -status n155 ++ head -n 1 ++ cut -f 1 -d ' ' + '[' smpd == smpd ']' + (( numhosts += 1 )) + echo 'startmpich2.sh: found running smpd on n155' startmpich2.sh: found running smpd on n155 + for host in '`cat $machines | uniq`' ++ /opt/mpich2/intel/11.1//bin/smpd -port 24667 -status n146 ++ head -n 1 ++ cut -f 1 -d ' ' + '[' smpd == smpd ']' + (( numhosts += 1 )) + echo 'startmpich2.sh: found running smpd on n146' startmpich2.sh: found running smpd on n146 + for host in '`cat $machines | uniq`' ++ /opt/mpich2/intel/11.1//bin/smpd -port 24667 -status n149 ++ head -n 1 ++ cut -f 1 -d ' ' + '[' smpd == smpd ']' + (( numhosts += 1 )) + echo 'startmpich2.sh: found running smpd on n149' startmpich2.sh: found running smpd on n149 + for host in '`cat $machines | uniq`' ++ /opt/mpich2/intel/11.1//bin/smpd -port 24667 -status n143 ++ head -n 1 ++ cut -f 1 -d ' ' + '[' smpd == smpd ']' + (( numhosts += 1 )) + echo 'startmpich2.sh: found running smpd on n143' startmpich2.sh: found running smpd on n143 + '[' 7 -eq 7 ']' + echo 'startmpich2.sh: got all 7 of 7 nodes' startmpich2.sh: got all 7 of 7 nodes + exit 0 START END Sat Apr 9 09:21:28 EDT 2011 -catch_rsh /opt/mpich2/intel/11.1/ Your job finished at Sat Apr 9 09:21:33 EDT 2011