USER = jtomczak HOMEDIR = /home/users/jtomczak JOB_ID = 4510 JOB_NAME = FS-b150-6 QUEUE = wp10 NSLOTS = 15 NHOSTS = 6 SUB_HOST = rupc06 SUB_DIR = /mnt/wk07/jtomczak/DATA/MATERIALS/FeSi/DMFT/QMC/U5.0/FAST/beta150/nf6 EXE_HOST = n165 NFS_HOST = caip02s EXE_DIR = /mnt/p06 OUT_DIR = /tmp TMP_DIR = /tmp/4510.1.wp10 INFO = Files larger than 100MB will be compressed to reduce the network load. INFO2 = Do NOT remove this file while job is running! PORT = 24510 rcp: /mnt/wk07/jtomczak/DATA/MATERIALS/FeSi/DMFT/QMC/U5.0/FAST/beta150/nf6/imp.0: not a plain file Failure to rcp files! Your job started at Thu Mar 31 15:33:19 EDT 2011 on host n165 in /mnt/p06/4510jtomczak Submission directory is /mnt/wk07/jtomczak/DATA/MATERIALS/FeSi/DMFT/QMC/U5.0/FAST/beta150/nf6 on host rupc06 ----------------------------------------------------------------------------------------- + echo -catch_rsh /opt/sge6/spool/n165/active_jobs/4510.1/pe_hostfile /opt/mpich2/intel/11.1/ -catch_rsh /opt/sge6/spool/n165/active_jobs/4510.1/pe_hostfile /opt/mpich2/intel/11.1/ + SLEEPTIME=5 + RETRIES=10 + catch_rsh=0 + catch_hostname=0 + '[' 3 -gt 0 ']' + case "$1" in + catch_rsh=1 + shift + '[' 2 -gt 0 ']' + case "$1" in + break ++ basename /opt/sge6/mpich2_smpd/startmpich2.sh + me=startmpich2.sh + '[' 2 -lt 2 ']' + pe_hostfile=/opt/sge6/spool/n165/active_jobs/4510.1/pe_hostfile + MPICH2_ROOT=/opt/mpich2/intel/11.1/ + export MPICH2_ROOT + '[' '!' -x /opt/sge6/mpich2_smpd/bin/lx26-amd64/start_mpich2 ']' + '[' '!' -x /opt/mpich2/intel/11.1//bin/smpd ']' + '[' '!' -r /opt/sge6/spool/n165/active_jobs/4510.1/pe_hostfile ']' + machines=/tmp/4510.1.wp10/machines + PeHostfile2MachineFile /opt/sge6/spool/n165/active_jobs/4510.1/pe_hostfile + cat /opt/sge6/spool/n165/active_jobs/4510.1/pe_hostfile + read line ++ echo n165 4 wp10@n165 UNDEFINED ++ cut -f1 '-d ' ++ cut -f1 -d. + host=n165 ++ echo n165 4 wp10@n165 UNDEFINED ++ cut -f2 '-d ' + nslots=4 + i=1 + '[' 1 -le 4 ']' + echo n165 ++ expr 1 + 1 + i=2 + '[' 2 -le 4 ']' + echo n165 ++ expr 2 + 1 + i=3 + '[' 3 -le 4 ']' + echo n165 ++ expr 3 + 1 + i=4 + '[' 4 -le 4 ']' + echo n165 ++ expr 4 + 1 + i=5 + '[' 5 -le 4 ']' + read line ++ echo n146 1 wp10@n146 UNDEFINED ++ cut -f1 '-d ' ++ cut -f1 -d. + host=n146 ++ echo n146 1 wp10@n146 UNDEFINED ++ cut -f2 '-d ' + nslots=1 + i=1 + '[' 1 -le 1 ']' + echo n146 ++ expr 1 + 1 + i=2 + '[' 2 -le 1 ']' + read line ++ echo n153 4 wp10@n153 UNDEFINED ++ cut -f1 '-d ' ++ cut -f1 -d. + host=n153 ++ echo n153 4 wp10@n153 UNDEFINED ++ cut -f2 '-d ' + nslots=4 + i=1 + '[' 1 -le 4 ']' + echo n153 ++ expr 1 + 1 + i=2 + '[' 2 -le 4 ']' + echo n153 ++ expr 2 + 1 + i=3 + '[' 3 -le 4 ']' + echo n153 ++ expr 3 + 1 + i=4 + '[' 4 -le 4 ']' + echo n153 ++ expr 4 + 1 + i=5 + '[' 5 -le 4 ']' + read line ++ echo n163 2 wp10@n163 UNDEFINED ++ cut -f1 '-d ' ++ cut -f1 -d. + host=n163 ++ echo n163 2 wp10@n163 UNDEFINED ++ cut -f2 '-d ' + nslots=2 + i=1 + '[' 1 -le 2 ']' + echo n163 ++ expr 1 + 1 + i=2 + '[' 2 -le 2 ']' + echo n163 ++ expr 2 + 1 + i=3 + '[' 3 -le 2 ']' + read line ++ echo n141 3 wp10@n141 UNDEFINED ++ cut -f1 '-d ' ++ cut -f1 -d. + host=n141 ++ echo n141 3 wp10@n141 UNDEFINED ++ cut -f2 '-d ' + nslots=3 + i=1 + '[' 1 -le 3 ']' + echo n141 ++ expr 1 + 1 + i=2 + '[' 2 -le 3 ']' + echo n141 ++ expr 2 + 1 + i=3 + '[' 3 -le 3 ']' + echo n141 ++ expr 3 + 1 + i=4 + '[' 4 -le 3 ']' + read line ++ echo n155 1 wp10@n155 UNDEFINED ++ cut -f1 '-d ' ++ cut -f1 -d. + host=n155 ++ echo n155 1 wp10@n155 UNDEFINED ++ cut -f2 '-d ' + nslots=1 + i=1 + '[' 1 -le 1 ']' + echo n155 ++ expr 1 + 1 + i=2 + '[' 2 -le 1 ']' + read line + cat /tmp/4510.1.wp10/machines n165 n165 n165 n165 n146 n153 n153 n153 n153 n163 n163 n141 n141 n141 n155 + '[' 1 = 1 ']' + rsh_wrapper=/opt/sge6/mpich2_smpd/rsh + '[' '!' -x /opt/sge6/mpich2_smpd/rsh ']' + rshcmd=rsh + case "$ARC" in + ln -s /opt/sge6/mpich2_smpd/rsh /tmp/4510.1.wp10/rsh + hash -r + '[' 0 = 1 ']' + port=24510 ++ cat /tmp/4510.1.wp10/machines ++ uniq + for host in '`cat $machines | uniq`' + /opt/sge6/mpich2_smpd/bin/lx26-amd64/start_mpich2 -n n165 /opt/mpich2/intel/11.1//bin/smpd 24510 + for host in '`cat $machines | uniq`' + /opt/sge6/mpich2_smpd/bin/lx26-amd64/start_mpich2 -n n146 /opt/mpich2/intel/11.1//bin/smpd 24510 + for host in '`cat $machines | uniq`' + /opt/sge6/mpich2_smpd/bin/lx26-amd64/start_mpich2 -n n153 /opt/mpich2/intel/11.1//bin/smpd 24510 + for host in '`cat $machines | uniq`' + /opt/sge6/mpich2_smpd/bin/lx26-amd64/start_mpich2 -n n163 /opt/mpich2/intel/11.1//bin/smpd 24510 rsh n146 /opt/mpich2/intel/11.1//bin/smpd -port 24510 -d 0 rsh n165 /opt/mpich2/intel/11.1//bin/smpd -port 24510 -d 0 + for host in '`cat $machines | uniq`' + /opt/sge6/mpich2_smpd/bin/lx26-amd64/start_mpich2 -n n141 /opt/mpich2/intel/11.1//bin/smpd 24510 rsh n163 /opt/mpich2/intel/11.1//bin/smpd -port 24510 -d 0 rsh n153 /opt/mpich2/intel/11.1//bin/smpd -port 24510 -d 0 + for host in '`cat $machines | uniq`' + /opt/sge6/mpich2_smpd/bin/lx26-amd64/start_mpich2 -n n155 /opt/mpich2/intel/11.1//bin/smpd 24510 + actual_retry=1 + '[' 1 -le 10 ']' + echo 'startmpich2.sh: check for smpd daemons (1 of 10)' startmpich2.sh: check for smpd daemons (1 of 10) + numhosts=0 ++ cat /tmp/4510.1.wp10/machines ++ uniq + for host in '`cat $machines | uniq`' ++ /opt/mpich2/intel/11.1//bin/smpd -port 24510 -status n165 ++ head -n 1 ++ cut -f 1 -d ' ' rsh n155 /opt/mpich2/intel/11.1//bin/smpd -port 24510 -d 0 rsh n141 /opt/mpich2/intel/11.1//bin/smpd -port 24510 -d 0 Assertion failed in file smpd_sock_wait.i at line 337: pollinfo->state == SMPDU_SOCKI_STATE_DISCONNECTED && pollfd->fd == -1 internal ABORT - process 0 + '[' '' == smpd ']' + echo 'startmpich2.sh: missing smpd on n165' startmpich2.sh: missing smpd on n165 + for host in '`cat $machines | uniq`' ++ /opt/mpich2/intel/11.1//bin/smpd -port 24510 -status n146 ++ cut -f 1 -d ' ' ++ head -n 1 Assertion failed in file smpd_sock_wait.i at line 337: pollinfo->state == SMPDU_SOCKI_STATE_DISCONNECTED && pollfd->fd == -1 internal ABORT - process 0 + '[' '' == smpd ']' + echo 'startmpich2.sh: missing smpd on n146' startmpich2.sh: missing smpd on n146 + for host in '`cat $machines | uniq`' ++ /opt/mpich2/intel/11.1//bin/smpd -port 24510 -status n153 ++ head -n 1 ++ cut -f 1 -d ' ' + '[' smpd == smpd ']' + (( numhosts += 1 )) + echo 'startmpich2.sh: found running smpd on n153' startmpich2.sh: found running smpd on n153 + for host in '`cat $machines | uniq`' ++ /opt/mpich2/intel/11.1//bin/smpd -port 24510 -status n163 ++ head -n 1 ++ cut -f 1 -d ' ' + '[' smpd == smpd ']' + (( numhosts += 1 )) + echo 'startmpich2.sh: found running smpd on n163' startmpich2.sh: found running smpd on n163 + for host in '`cat $machines | uniq`' ++ /opt/mpich2/intel/11.1//bin/smpd -port 24510 -status n141 ++ head -n 1 ++ cut -f 1 -d ' ' + '[' smpd == smpd ']' + (( numhosts += 1 )) + echo 'startmpich2.sh: found running smpd on n141' startmpich2.sh: found running smpd on n141 + for host in '`cat $machines | uniq`' ++ /opt/mpich2/intel/11.1//bin/smpd -port 24510 -status n155 ++ head -n 1 ++ cut -f 1 -d ' ' + '[' smpd == smpd ']' + (( numhosts += 1 )) + echo 'startmpich2.sh: found running smpd on n155' startmpich2.sh: found running smpd on n155 + '[' 6 -eq 4 ']' + sleep 5 + (( actual_retry += 1 )) + '[' 2 -le 10 ']' + echo 'startmpich2.sh: check for smpd daemons (2 of 10)' startmpich2.sh: check for smpd daemons (2 of 10) + numhosts=0 ++ cat /tmp/4510.1.wp10/machines ++ uniq + for host in '`cat $machines | uniq`' ++ /opt/mpich2/intel/11.1//bin/smpd -port 24510 -status n165 ++ head -n 1 ++ cut -f 1 -d ' ' + '[' smpd == smpd ']' + (( numhosts += 1 )) + echo 'startmpich2.sh: found running smpd on n165' startmpich2.sh: found running smpd on n165 + for host in '`cat $machines | uniq`' ++ /opt/mpich2/intel/11.1//bin/smpd -port 24510 -status n146 ++ head -n 1 ++ cut -f 1 -d ' ' + '[' smpd == smpd ']' + (( numhosts += 1 )) + echo 'startmpich2.sh: found running smpd on n146' startmpich2.sh: found running smpd on n146 + for host in '`cat $machines | uniq`' ++ /opt/mpich2/intel/11.1//bin/smpd -port 24510 -status n153 ++ head -n 1 ++ cut -f 1 -d ' ' + '[' smpd == smpd ']' + (( numhosts += 1 )) + echo 'startmpich2.sh: found running smpd on n153' startmpich2.sh: found running smpd on n153 + for host in '`cat $machines | uniq`' ++ /opt/mpich2/intel/11.1//bin/smpd -port 24510 -status n163 ++ head -n 1 ++ cut -f 1 -d ' ' + '[' smpd == smpd ']' + (( numhosts += 1 )) + echo 'startmpich2.sh: found running smpd on n163' startmpich2.sh: found running smpd on n163 + for host in '`cat $machines | uniq`' ++ /opt/mpich2/intel/11.1//bin/smpd -port 24510 -status n141 ++ head -n 1 ++ cut -f 1 -d ' ' + '[' smpd == smpd ']' + (( numhosts += 1 )) + echo 'startmpich2.sh: found running smpd on n141' startmpich2.sh: found running smpd on n141 + for host in '`cat $machines | uniq`' ++ /opt/mpich2/intel/11.1//bin/smpd -port 24510 -status n155 ++ head -n 1 ++ cut -f 1 -d ' ' + '[' smpd == smpd ']' + (( numhosts += 1 )) + echo 'startmpich2.sh: found running smpd on n155' startmpich2.sh: found running smpd on n155 + '[' 6 -eq 6 ']' + echo 'startmpich2.sh: got all 6 of 6 nodes' startmpich2.sh: got all 6 of 6 nodes + exit 0 START END Sat Apr 2 13:11:42 EDT 2011 -catch_rsh /opt/mpich2/intel/11.1/ Your job finished at Sat Apr 2 13:11:42 EDT 2011