USER      =  quanyin
HOMEDIR   =  /home/quanyin
JOB_ID    =  1011
JOB_NAME  =  CmO2J6T0.01
QUEUE     =  wp10
NSLOTS    =  12
NHOSTS    =  1

SUB_HOST  =  rupc06
SUB_DIR   =  /mnt/wk05/quanyin/DMFT/CmO2/CmO2

EXE_HOST  =  n149
NFS_HOST  =  n149
EXE_DIR   =  /tmp
OUT_DIR   =  /tmp
TMP_DIR   =  /tmp/1011.1.wp10

INFO      =  Files larger than 100MB will be compressed to reduce the network load.
INFO2     =  Do NOT remove this file while job is running!

PORT      =  21011
rcp: /mnt/wk05/quanyin/DMFT/CmO2/CmO2/1009quanyin: not a plain file
Failure to rcp files!

Your job started at Tue Dec 21 09:36:07 EST 2010 on host n149 in /tmp/1011quanyin
Submission directory is /mnt/wk05/quanyin/DMFT/CmO2/CmO2 on host rupc06
-----------------------------------------------------------------------------------------
+ echo -catch_rsh /opt/sge6/spool/n149/active_jobs/1011.1/pe_hostfile /opt/mpich2/intel/11.1/
-catch_rsh /opt/sge6/spool/n149/active_jobs/1011.1/pe_hostfile /opt/mpich2/intel/11.1/
+ SLEEPTIME=5
+ RETRIES=10
+ catch_rsh=0
+ catch_hostname=0
+ '[' 3 -gt 0 ']'
+ case "$1" in
+ catch_rsh=1
+ shift
+ '[' 2 -gt 0 ']'
+ case "$1" in
+ break
++ basename /opt/sge6/mpich2_smpd/startmpich2.sh
+ me=startmpich2.sh
+ '[' 2 -lt 2 ']'
+ pe_hostfile=/opt/sge6/spool/n149/active_jobs/1011.1/pe_hostfile
+ MPICH2_ROOT=/opt/mpich2/intel/11.1/
+ export MPICH2_ROOT
+ '[' '!' -x /opt/sge6/mpich2_smpd/bin/lx26-amd64/start_mpich2 ']'
+ '[' '!' -x /opt/mpich2/intel/11.1//bin/smpd ']'
+ '[' '!' -r /opt/sge6/spool/n149/active_jobs/1011.1/pe_hostfile ']'
+ machines=/tmp/1011.1.wp10/machines
+ PeHostfile2MachineFile /opt/sge6/spool/n149/active_jobs/1011.1/pe_hostfile
+ cat /opt/sge6/spool/n149/active_jobs/1011.1/pe_hostfile
+ read line
++ echo n149 12 wp10@n149 UNDEFINED
++ cut -f1 '-d '
++ cut -f1 -d.
+ host=n149
++ echo n149 12 wp10@n149 UNDEFINED
++ cut -f2 '-d '
+ nslots=12
+ i=1
+ '[' 1 -le 12 ']'
+ echo n149
++ expr 1 + 1
+ i=2
+ '[' 2 -le 12 ']'
+ echo n149
++ expr 2 + 1
+ i=3
+ '[' 3 -le 12 ']'
+ echo n149
++ expr 3 + 1
+ i=4
+ '[' 4 -le 12 ']'
+ echo n149
++ expr 4 + 1
+ i=5
+ '[' 5 -le 12 ']'
+ echo n149
++ expr 5 + 1
+ i=6
+ '[' 6 -le 12 ']'
+ echo n149
++ expr 6 + 1
+ i=7
+ '[' 7 -le 12 ']'
+ echo n149
++ expr 7 + 1
+ i=8
+ '[' 8 -le 12 ']'
+ echo n149
++ expr 8 + 1
+ i=9
+ '[' 9 -le 12 ']'
+ echo n149
++ expr 9 + 1
+ i=10
+ '[' 10 -le 12 ']'
+ echo n149
++ expr 10 + 1
+ i=11
+ '[' 11 -le 12 ']'
+ echo n149
++ expr 11 + 1
+ i=12
+ '[' 12 -le 12 ']'
+ echo n149
++ expr 12 + 1
+ i=13
+ '[' 13 -le 12 ']'
+ read line
+ cat /tmp/1011.1.wp10/machines
n149
n149
n149
n149
n149
n149
n149
n149
n149
n149
n149
n149
+ '[' 1 = 1 ']'
+ rsh_wrapper=/opt/sge6/mpich2_smpd/rsh
+ '[' '!' -x /opt/sge6/mpich2_smpd/rsh ']'
+ rshcmd=rsh
+ case "$ARC" in
+ ln -s /opt/sge6/mpich2_smpd/rsh /tmp/1011.1.wp10/rsh
+ hash -r
+ '[' 0 = 1 ']'
+ port=21011
++ cat /tmp/1011.1.wp10/machines
++ uniq
+ for host in '`cat $machines | uniq`'
+ /opt/sge6/mpich2_smpd/bin/lx26-amd64/start_mpich2 -n n149 /opt/mpich2/intel/11.1//bin/smpd 21011
+ actual_retry=1
+ '[' 1 -le 10 ']'
+ echo 'startmpich2.sh: check for smpd daemons (1 of 10)'
startmpich2.sh: check for smpd daemons (1 of 10)
+ numhosts=0
++ cat /tmp/1011.1.wp10/machines
++ uniq
+ for host in '`cat $machines | uniq`'
++ /opt/mpich2/intel/11.1//bin/smpd -port 21011 -status n149
++ head -n 1
++ cut -f 1 -d ' '
rsh n149 /opt/mpich2/intel/11.1//bin/smpd -port 21011 -d 0
Assertion failed in file smpd_sock_wait.i at line 337: pollinfo->state == SMPDU_SOCKI_STATE_DISCONNECTED && pollfd->fd == -1
internal ABORT - process 0
+ '[' '' == smpd ']'
+ echo 'startmpich2.sh: missing smpd on n149'
startmpich2.sh: missing smpd on n149
+ '[' 1 -eq 0 ']'
+ sleep 5
+ (( actual_retry += 1 ))
+ '[' 2 -le 10 ']'
+ echo 'startmpich2.sh: check for smpd daemons (2 of 10)'
startmpich2.sh: check for smpd daemons (2 of 10)
+ numhosts=0
++ cat /tmp/1011.1.wp10/machines
++ uniq
+ for host in '`cat $machines | uniq`'
++ /opt/mpich2/intel/11.1//bin/smpd -port 21011 -status n149
++ head -n 1
++ cut -f 1 -d ' '
+ '[' smpd == smpd ']'
+ (( numhosts += 1 ))
+ echo 'startmpich2.sh: found running smpd on n149'
startmpich2.sh: found running smpd on n149
+ '[' 1 -eq 1 ']'
+ echo 'startmpich2.sh: got all 1 of 1 nodes'
startmpich2.sh: got all 1 of 1 nodes
+ exit 0
/home/quanyin/dmft_w2k/bin/run_dmft.py:738: DeprecationWarning: os.popen3 is deprecated.  Use the subprocess module.
  stdin, stdout, stderr = os.popen3(cmd)
/home/quanyin/dmft_w2k/bin/run_dmft.py:744: DeprecationWarning: os.popen3 is deprecated.  Use the subprocess module.
  stdin, stdout, stderr = os.popen3(cmd)
/home/quanyin/dmft_w2k/bin/run_dmft.py:758: DeprecationWarning: os.popen3 is deprecated.  Use the subprocess module.
  stdin, stdout, stderr = os.popen3(cmd)
/home/quanyin/dmft_w2k/bin/run_dmft.py:262: DeprecationWarning: os.popen3 is deprecated.  Use the subprocess module.
  stdin, stdout, stderr = os.popen3(cmd)
/mnt/home/quanyin/dmft_w2k/bin/oca.py:168: DeprecationWarning: os.popen3 is deprecated.  Use the subprocess module.
  stdin, stdout, stderr = os.popen3( cmd )
/mnt/home/quanyin/dmft_w2k/bin/oca.py:234: DeprecationWarning: os.popen3 is deprecated.  Use the subprocess module.
  stdin, stdout, stderr = os.popen3(broad_cmd)
/mnt/home/quanyin/dmft_w2k/bin/oca.py:252: DeprecationWarning: os.popen3 is deprecated.  Use the subprocess module.
  stdin, stdout, stderr = os.popen3(oca_cmd)
/home/quanyin/dmft_w2k/bin/run_dmft.py:312: DeprecationWarning: os.popen3 is deprecated.  Use the subprocess module.
  stdin, stdout, stderr = os.popen3(cmd)
-catch_rsh /opt/mpich2/intel/11.1/
Your job finished at Tue Dec 21 11:50:06 EST 2010
/mnt/home/quanyin
kill: no process ID specified
Try `kill --help' for more information.